Combine oats, water, flax seed, wheat germ, chia seeds, and pumpkin spice in a small microwavable bowl. Microwave for 3 minutes (watching carefully to be sure it doesn't overflow) until cooked through.
In a separate small bowl, combine dairy-free yogurt, pumpkin puree, and cinnamon.
Add dollops of yogurt mixture in with the cooked oats and swirl around.
Top with additional flax, chia seeds, and pecans. Drizzle desired sweetener to taste.